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If you are referring to the stain glass windows in Hyrule Castle, they are windows built long ago as dedications to the awakened sages. These sages are featured in The Legend of Zelda: Ocarina of Time. In order, they are Saria, Darunia, Ruto, Impa, and Nabooru.

Ganon is also featured and everyone's favorite sage: Rauru

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